Match details
Record ID: |
OQ459817.1 |
Database: |
nt |
Go to original record |
Description: |
Lundia spruceana voucher Lohmann 610 (SPF) plastid, partial genome. |
Taxon: |
Lundia spruceana |
Original size: |
157200 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46955 |
47520 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaaacaa aggttcagaa
151 aaggaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttggc tgcgttggta gaggaatctt tccattgaaa cttcagaaag
251 gatgaaggat aaacgtatct attgaatact atatcaatag attaatgatg
301 gcccgaatct gtatctgtat ttttttatat tatatgaaaa atggaagaat
351 tagtgtgaat tgattccaca ttgaagaaag aatcgaatat tcattcatca
401 aatcattcac tccatagtcc gatagttctt ttaaagaact gattaagcgg
451 acgagaataa agatagagtc ccattctaca tgtcaatgcc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac ttttaaaatc gtgagggttc
551 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.