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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON872370.1 nt Gynostemma burmanicum (nom. inval.)... 157834 bp Gynostemma burmanicum (nom. inval.) QL-PLN-00-007 610 bp View
ON872371.1 nt Gynostemma caulopterum chloroplast,... 157767 bp Gynostemma caulopterum QL-PLN-00-007 615 bp View
ON872372.1 nt Gynostemma compressum chloroplast, ... 157419 bp Gynostemma compressum QL-PLN-00-007 616 bp View
ON872373.1 nt Gynostemma guangxiense chloroplast,... 157590 bp Gynostemma guangxiense QL-PLN-00-007 617 bp View
ON872375.1 nt Gynostemma longipes chloroplast, co... 157765 bp Gynostemma longipes QL-PLN-00-007 615 bp View
ON920921.1 nt Zea mays cultivar INIA 601 chloropl... 140451 bp Zea mays QL-PLN-00-007 532 bp View
ON950076.1 nt Clinopodium barosmum chloroplast, c... 152261 bp Clinopodium barosmum QL-PLN-00-007 567 bp View
ON969348.1 nt Bambusa emeiensis chloroplast, comp... 139440 bp Bambusa emeiensis QL-PLN-00-007 613 bp View
OP007343.1 nt Buddleja sp. GJ53 chloroplast, comp... 154289 bp Buddleja sp. GJ53 QL-PLN-00-007 559 bp View
OP007347.1 nt Buddleja crispa chloroplast, comple... 154317 bp Buddleja crispa QL-PLN-00-007 559 bp View
OP007351.1 nt Buddleja officinalis chloroplast, c... 154312 bp Buddleja officinalis QL-PLN-00-007 559 bp View
OP007352.1 nt Buddleja davidii chloroplast, compl... 154112 bp Buddleja davidii QL-PLN-00-007 559 bp View
OP007353.1 nt Buddleja davidii chloroplast, compl... 154145 bp Buddleja davidii QL-PLN-00-007 559 bp View
OP007356.1 nt Buddleja japonica chloroplast, comp... 154184 bp Buddleja japonica QL-PLN-00-007 559 bp View
OP007358.1 nt Buddleja lindleyana chloroplast, co... 154455 bp Buddleja lindleyana QL-PLN-00-007 567 bp View
OP007359.1 nt Buddleja davidii chloroplast, compl... 154112 bp Buddleja davidii QL-PLN-00-007 559 bp View
OP007360.1 nt Buddleja paniculata chloroplast, co... 154266 bp Buddleja paniculata QL-PLN-00-007 559 bp View
OP007361.1 nt Buddleja paniculata chloroplast, co... 154298 bp Buddleja paniculata QL-PLN-00-007 559 bp View
OP007362.1 nt Buddleja sp. GJ73 chloroplast, comp... 154290 bp Buddleja sp. GJ73 QL-PLN-00-007 559 bp View
OP007363.1 nt Buddleja sp. GJ74 chloroplast, comp... 154289 bp Buddleja sp. GJ74 QL-PLN-00-007 559 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.