Match details
Record ID: |
OP007358.1 |
Database: |
nt |
Go to original record |
Description: |
Buddleja lindleyana chloroplast, complete genome. |
Taxon: |
Buddleja lindleyana |
Original size: |
154455 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48193 |
48759 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgttgt ctcaaaacaa aggttcagaa
151 ggcgaaaaag gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttaactg cgttggtagc ggaatctttc gatcgaaact tcagaaagag
251 tgacggataa acgtatctat tgaatactat atcaaatata tcaaatgatt
301 aatgatggac cgaatctgta tttttttata tgaaaaatgg aaaaattggt
351 gtgaatttat tccacattga agaaagaatc aaataaaata ttcattcatc
401 aaatcattca ctccatagtc tgatagatct tttaaaaaac tgattaatcg
451 gacgagaata aagatagagt cccattctac atgtcaatac cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.