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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM403711.1 nt Phytolacca americana chloroplast, c... 155092 bp Phytolacca americana QL-PLN-00-007 617 bp View
OM403712.1 nt Phytolacca dioica chloroplast, comp... 155364 bp Phytolacca dioica QL-PLN-00-007 619 bp View
OM403716.1 nt Phytolacca americana chloroplast, c... 155092 bp Phytolacca americana QL-PLN-00-007 617 bp View
OM457823.1 nt Agastache rugosa chloroplast, compl... 151652 bp Agastache rugosa QL-PLN-00-007 558 bp View
OM674664.1 nt Koenigia forrestii voucher Tsui1459... 156752 bp Koenigia forrestii QL-PLN-00-007 585 bp View
OM674665.1 nt Koenigia forrestii voucher Tsui1597... 156771 bp Koenigia forrestii QL-PLN-00-007 585 bp View
OM674722.1 nt Hydrocotyle sibthorpioides cultivar... 152659 bp Hydrocotyle sibthorpioides QL-PLN-00-007 589 bp View
OM687226.1 nt Bambusa multiplex chloroplast, comp... 139460 bp Bambusa multiplex QL-PLN-00-007 613 bp View
OM687229.1 nt Bambusa tuldoides f. swolleninterno... 139460 bp Bambusa tuldoides f. swolleninternode QL-PLN-00-007 613 bp View
OM691672.1 nt Salvia rosmarinus isolate BPTPS028 ... 151577 bp Salvia rosmarinus QL-PLN-00-007 570 bp View
OM691673.1 nt Salvia rosmarinus isolate BPTPS048 ... 151585 bp Salvia rosmarinus QL-PLN-00-007 568 bp View
OM731926.1 nt Phlomis fruticosa chloroplast, comp... 151639 bp Phlomis fruticosa QL-PLN-00-007 562 bp View
OM735566.1 nt Koenigia forrestii voucher Tsui1425... 156771 bp Koenigia forrestii QL-PLN-00-007 585 bp View
OM804185.1 nt Lycium barbarum clone V12L0052 Ning... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
OM804186.1 nt Lycium barbarum clone V12L0053 Ning... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
OM804187.1 nt Lycium sp. clone V12L0054 Guangzhou... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804189.1 nt Lycium sp. clone V12L0135 1haohuang... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804190.1 nt Lycium sp. clone V12L0136 14-420 tR... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804191.1 nt Lycium sp. clone V12L0137 09-191 tR... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804192.1 nt Lycium sp. clone V12L0138 YX-2 tRNA... 1088 bp Lycium sp. QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.