Match details
Record ID: |
OM804192.1 |
Database: |
nt |
Go to original record |
Description: |
Lycium sp. clone V12L0138 YX-2 tRNA-Leu (trnL) gene, trnL-trnF intergenic spacer, and tRNA-Phe (trnF) gene, complete sequence; chloroplast. |
Taxon: |
Lycium sp. |
Original size: |
1088 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
69 |
638 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151 agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201 gagttaaatg cgttggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactcta
301 tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaatagaa
351 gaattggtgt gaatcgattc tacattgaag aaagaatcga atattcattg
401 atcaaatcat tcactccata gtctgataga tcttttgaag aactgattaa
451 tcggacgaga ataaagatag agtcccgttc tacatgtcaa taccggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.