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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY319142.1 nt Polyalthia longipes tRNA-Leu (trnL)... 981 bp Polyalthia longipes QL-PLN-00-007 576 bp View
AY319145.1 nt Polyalthia rumphii tRNA-Leu (trnL) ... 980 bp Huberantha rumphii QL-PLN-00-007 576 bp View
AY319146.1 nt Polyalthia cf. glabra Rastini 224 t... 979 bp Monoon cf. glabrum Rastini 224 QL-PLN-00-007 576 bp View
AY319148.1 nt Polyalthia stenopetala tRNA-Leu (tr... 979 bp Polyalthia stenopetala QL-PLN-00-007 575 bp View
AY319152.1 nt Polyalthia suberosa tRNA-Leu (trnL)... 984 bp Polyalthia suberosa QL-PLN-00-007 576 bp View
AY319153.1 nt Polyalthia sumatrana tRNA-Leu (trnL... 971 bp Maasia sumatrana QL-PLN-00-007 571 bp View
AY319154.1 nt Polyalthia viridis tRNA-Leu (trnL) ... 980 bp Monoon viride QL-PLN-00-007 576 bp View
AY319155.1 nt Polyalthia xanthopetala tRNA-Leu (t... 980 bp Polyalthia xanthopetala QL-PLN-00-007 576 bp View
AY319156.1 nt Popowia hirta tRNA-Leu (trnL) gene ... 979 bp Popowia hirta QL-PLN-00-007 576 bp View
AY319157.1 nt Popowia odoardi tRNA-Leu (trnL) gen... 980 bp Popowia odoardoi QL-PLN-00-007 577 bp View
AY319158.1 nt Popowia pisocarpa tRNA-Leu (trnL) g... 979 bp Popowia pisocarpa QL-PLN-00-007 576 bp View
AY319161.1 nt Pseuduvaria coriacea tRNA-Leu (trnL... 985 bp Pseuduvaria coriacea QL-PLN-00-007 576 bp View
AY319162.1 nt Pseuduvaria rugosa tRNA-Leu (trnL) ... 979 bp Pseuduvaria rugosa QL-PLN-00-007 576 bp View
AY319163.1 nt Pseuduvaria pamattonis tRNA-Leu (tr... 979 bp Pseuduvaria pamattonis QL-PLN-00-007 575 bp View
AY319164.1 nt Sageraea lanceolata tRNA-Leu (trnL)... 972 bp Sageraea lanceolata QL-PLN-00-007 576 bp View
AY319167.1 nt Stelechocarpus burahol tRNA-Leu (tr... 972 bp Stelechocarpus burahol QL-PLN-00-007 576 bp View
AY319168.1 nt Stelechocarpus cauliflorus tRNA-Leu... 980 bp Stelechocarpus cauliflorus QL-PLN-00-007 576 bp View
AY319185.1 nt Melodorum fruticosum tRNA-Leu (trnL... 965 bp Melodorum fruticosum QL-PLN-00-007 567 bp View
AY319187.1 nt Melodorum cf. fruticosum Mols 10 tR... 965 bp Melodorum cf. fruticosum Mols 10 QL-PLN-00-007 567 bp View
AY319188.1 nt Anaxagorea luzonensis tRNA-Leu (trn... 962 bp Anaxagorea luzonensis QL-PLN-00-007 586 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.