Match details
Record ID: |
AY319157.1 |
Database: |
nt |
Go to original record |
Description: |
Popowia odoardi tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Popowia odoardoi |
Original size: |
980 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
578 |
+ |
577 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaata gagttgactg cattggtagg ggaattcttt ctttctatcc
251 aaacgacaga aaggatgact ttgtatacat acgtatacat actgaaacat
301 caaacgatta atcacgactc gaatcagtct ttttttatat gaaaaaattt
351 cagaatagaa ggattgtgat ttgattccaa gttgaaggaa gaatcgaata
401 ttcagagatc aaatcattca ttcccgagtc taatagatct ttagaataac
451 tgattaatcg gacgagaata aagatagagt cccattctac atgtcaatac
501 agacaacaat gaaattttta gtaagaggaa aatccgtcga ctttaaaaat
551 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
577 |
558 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.