Match details
Record ID: |
AY319153.1 |
Database: |
nt |
Go to original record |
Description: |
Polyalthia sumatrana tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Maasia sumatrana |
Original size: |
971 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
572 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaagaat
151 caaaaacaga aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatagaatt gactgcattg gtgggggaat tctttccttc tatccaaacg
251 acagaaagga tgaccttgta tacgtacgta tacatactga aacatcaaac
301 gattaatcac gactcgaatc agtatttttt tatatgaaaa atctcagaat
351 agaaggattg tgaattgatt ccaagttgaa ggaagaatcg aatattcaga
401 gatcaaatca ttcattcccg agtctaatag atcttttgaa gaactgatta
451 atcgaacgag aataaagata gagtcccatt ctacatgtca atacagacaa
501 caatgaaatt tatagtaaaa ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.