Match details
Record ID: |
AY319158.1 |
Database: |
nt |
Go to original record |
Description: |
Popowia pisocarpa tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Popowia pisocarpa |
Original size: |
979 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
577 |
+ |
576 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaata gagttgactg cattggtagg ggaattcttt ctttctatcc
251 aaacgacaga aaggatgact ttgtatacgt acgtatacat actgaaacat
301 caaacgatta atcacgactc gaatcagtct ttttttatat gaaaaatttc
351 agaatagaag gattgtgatt tgattccaag ttgaaggaag aatcaaatat
401 tcagagatca aatcattcat tcccgagtct aatagatctt tagaataact
451 gattaatcgg acgagaataa agatagagtc ccattctaca tgtcaataca
501 gacaacaatg aaatttttag taagaggaaa atccgtcgac tttaaaaatc
551 gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
576 |
557 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.