Match details
Record ID: |
AY319185.1 |
Database: |
nt |
Go to original record |
Description: |
Melodorum fruticosum tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Melodorum fruticosum |
Original size: |
965 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
568 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaagat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atagagttga ctgcattggt aagggaattc tttccttcta tccaaacgac
251 agaaaggatg atcttgtata cgtacgtata catattgaaa catcaaacga
301 ttaatcacga cttgaatcag tatttatctc tgaaaaattt cagaatagaa
351 agattgtgaa ttgattccaa gttgaaggaa gaatcgaata ttcagagata
401 aaatcattca ttccctagtc taatagatct tttgaagaac cgattaatcg
451 gacgagaata aagatagagt cccgttctac atgtcaatac agacaacaat
501 gaaattgata gtaagaggaa aatccgtcga ctttataaat cgtgagggtt
551 caagtccctc tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.