European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OK040957.1 nt Fallopia convolvulus chloroplast, c... 162636 bp Fallopia convolvulus QL-PLN-00-007 609 bp View
OK046142.1 nt Chimonobambusa hirtinoda chloroplas... 139561 bp Chimonobambusa hirtinoda QL-PLN-00-007 614 bp View
OK054489.1 nt Fagopyrum longistylum chloroplast, ... 159325 bp Fagopyrum longistylum QL-PLN-00-007 558 bp View
OK054490.1 nt Fagopyrum urophyllum chloroplast, c... 159350 bp Fagopyrum urophyllum QL-PLN-00-007 562 bp View
OK054491.1 nt Fagopyrum leptopodum chloroplast, c... 159376 bp Fagopyrum leptopodum QL-PLN-00-007 558 bp View
OK077519.1 nt Dianthus chinensis voucher RBRC_PB_... 149682 bp Dianthus chinensis QL-PLN-00-007 618 bp View
OK094518.1 nt Salvia chienii chloroplast, complet... 151530 bp Salvia chienii QL-PLN-00-007 529 bp View
OK129338.1 nt Cucurbita maxima chloroplast, compl... 157205 bp Cucurbita maxima QL-PLN-00-007 542 bp View
OK149242.1 nt Aristida adscensionis chloroplast, ... 138031 bp Aristida adscensionis QL-PLN-00-007 611 bp View
OK187475.1 nt Utricularia tricolor voucher SRS106... 149830 bp Utricularia tricolor QL-PLN-00-007 568 bp View
OK247924.1 nt Alopecurus carolinianus trnT-trnL i... 1722 bp Alopecurus carolinianus QL-PLN-00-007 565 bp View
OK247925.1 nt Alopecurus creticus trnT-trnL inter... 1782 bp Alopecurus creticus QL-PLN-00-007 614 bp View
OK247926.1 nt Alopecurus dasyanthus trnT-trnL int... 1776 bp Alopecurus dasyanthus QL-PLN-00-007 621 bp View
OK247927.1 nt Alopecurus magellanicus subsp. glau... 1766 bp Alopecurus magellanicus subsp. glaucus QL-PLN-00-007 615 bp View
OK247928.1 nt Alopecurus myosuroides var. tonsus ... 1771 bp Alopecurus myosuroides var. tonsus QL-PLN-00-007 620 bp View
OK247930.1 nt Alopecurus textilis subsp. textilis... 1749 bp Alopecurus textilis subsp. textilis QL-PLN-00-007 618 bp View
OK247931.1 nt Alopecurus tiflisiensis trnT-trnL i... 1752 bp Alopecurus tiflisiensis QL-PLN-00-007 621 bp View
OK247932.1 nt Apera spica-venti trnT-trnL interge... 1788 bp Apera spica-venti QL-PLN-00-007 620 bp View
OK247933.1 nt Arctagrostis latifolia subsp. arund... 1786 bp Arctagrostis latifolia subsp. arundinacea QL-PLN-00-007 620 bp View
OK247934.1 nt Arctopoa alexeji trnT-trnL intergen... 1798 bp Arctopoa alexeji QL-PLN-00-007 618 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.