Match details
Record ID: |
OK247927.1 |
Database: |
nt |
Go to original record |
Description: |
Alopecurus magellanicus subsp. glaucus trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Alopecurus magellanicus subsp. glaucus |
Original size: |
1766 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
816 |
1430 |
+ |
615 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtattg ttagtggaat tccttctaaa
251 ttcgagaaag aagggcttta tacatgtaat aaacacgtat agatactgac
301 atagcaaacg attaatcaca gaacctatat tataatatat ggttctttat
351 tcttttttag aatgaaatag aaatgattat gaaataaaaa attcataatt
401 ttttttttag aattattgtg aatacattcc aatctaatat ttagtaatca
451 aatgcttcaa ttcaaagttt tgaggtcttt aaaaaagtgg attaatcgga
501 cgaggacaaa gagagagtcc cattctacat gtcaatactg acaacaatga
551 aatttctagt aaaaggaaaa tccgtcgact ttataagtcg tgagggttca
601 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
615 |
596 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.