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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY319115.1 nt Meiogyne sp. Kessler 3219 tRNA-Leu ... 980 bp Meiogyne sp. Kessler 3219 QL-PLN-00-007 576 bp View
AY319116.1 nt Orophea brandisii tRNA-Leu (trnL) g... 972 bp Orophea brandisii QL-PLN-00-007 576 bp View
AY319117.1 nt Orophea celebica tRNA-Leu (trnL) ge... 972 bp Orophea celebica QL-PLN-00-007 576 bp View
AY319118.1 nt Orophea creaghii tRNA-Leu (trnL) ge... 971 bp Orophea creaghii QL-PLN-00-007 576 bp View
AY319119.1 nt Orophea enterocarpa tRNA-Leu (trnL)... 972 bp Orophea enterocarpa QL-PLN-00-007 576 bp View
AY319120.1 nt Orophea enneandra tRNA-Leu (trnL) g... 972 bp Orophea enneandra QL-PLN-00-007 576 bp View
AY319121.1 nt Orophea kerrii tRNA-Leu (trnL) gene... 972 bp Orophea kerrii QL-PLN-00-007 576 bp View
AY319123.1 nt Orophea polycarpa tRNA-Leu (trnL) g... 977 bp Orophea polycarpa QL-PLN-00-007 581 bp View
AY319124.1 nt Petalolophus megalopus tRNA-Leu (tr... 979 bp Pseuduvaria megalopus QL-PLN-00-007 576 bp View
AY319126.1 nt Phaeanthus splendens tRNA-Leu (trnL... 974 bp Phaeanthus splendens QL-PLN-00-007 576 bp View
AY319127.1 nt Platymitra macrocarpa tRNA-Leu (trn... 977 bp Platymitra macrocarpa QL-PLN-00-007 577 bp View
AY319128.1 nt Polyalthia borneensis tRNA-Leu (trn... 980 bp Polyalthia borneensis QL-PLN-00-007 576 bp View
AY319130.1 nt Polyalthia celebica tRNA-Leu (trnL)... 980 bp Polyalthia celebica QL-PLN-00-007 576 bp View
AY319131.1 nt Polyalthia cerasoides tRNA-Leu (trn... 974 bp Huberantha cerasoides QL-PLN-00-007 577 bp View
AY319132.1 nt Polyalthia cinnamomea tRNA-Leu (trn... 980 bp Polyalthia cinnamomea QL-PLN-00-007 576 bp View
AY319134.1 nt Polyalthia debilis tRNA-Leu (trnL) ... 978 bp Polyalthia debilis QL-PLN-00-007 576 bp View
AY319135.1 nt Polyalthia discolor tRNA-Leu (trnL)... 976 bp Maasia discolor QL-PLN-00-007 574 bp View
AY319137.1 nt Polyalthia glauca tRNA-Leu (trnL) g... 966 bp Maasia glauca QL-PLN-00-007 571 bp View
AY319139.1 nt Polyalthia cf. longifolia Mols 14 t... 980 bp Monoon cf. longifolium Mols 14 QL-PLN-00-007 576 bp View
AY319140.1 nt Polyalthia littoralis tRNA-Leu (trn... 990 bp Marsypopetalum littorale QL-PLN-00-007 576 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.