Match details
Record ID: |
AY319116.1 |
Database: |
nt |
Go to original record |
Description: |
Orophea brandisii tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Orophea brandisii |
Original size: |
972 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
577 |
+ |
576 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaata gagttgactg cattggtagg ggaattcctt ccttctatcc
251 aaacgacaga aaggatgacc ttgtatacgt acgtatacat actgaaacat
301 caaacgatta atcacgactc gaatcagtct ttttttatat gaaaaatttc
351 aaaatagaag gattgtgatt tgattccaag ttgaaggaag aatcaaatat
401 tcagagatca aatcattcat tcccgagtct aatagatttt tagaataact
451 gattaatcgg acgagaataa agatagagtc ccattctaca tgtcaataca
501 gacaacaatg aaatttatag taagaggaaa atccgtcgac tttaaaaatc
551 gtgagggttc aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
576 |
557 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.