Match details
Record ID: |
AY319123.1 |
Database: |
nt |
Go to original record |
Description: |
Orophea polycarpa tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Orophea polycarpa |
Original size: |
977 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
582 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaata gagttgactg cattggtagg ggaattcttt ccttctcttc
251 tatccaaacg acagaaagga tgaccttgta tacgtacgta tacataccga
301 aacatcaaac gattaatcac gactcgaatc agtctttttt tatatgaaaa
351 atttaaaaat agaaggattg tgatttgatt ccaagttgaa ggaagaatca
401 aatattcata gatcaaatca ttcattcccg agtctaatag atttttagaa
451 taactgatta atcggacgag aataaagata gagtcccatt ctacatgtca
501 atacagacaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.