Match details
Record ID: |
AY319139.1 |
Database: |
nt |
Go to original record |
Description: |
Polyalthia cf. longifolia Mols 14 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Monoon cf. longifolium Mols 14 |
Original size: |
980 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
577 |
+ |
576 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaata tagtttactg cattggtagg ggaattcttt ccttctatcc
251 aaacgacaga aaggatgacc ttgtctacgt acgtatacat actgaaacat
301 caaacgatta atcacgactc aaatcagtct ttttttatat gaaaaatttc
351 agaatagaag gattgtgatt tgattccaag ttgaaggaag aatcgaatat
401 tcagagatca aatcattcat tcccgagtct aatagatctt tagaataatt
451 gattaatcgg acgagaataa agatagagtc ccattctaca tgtcaataca
501 gacaacaatg aaatttatag taagaggaaa atccgtcgac tttaaaaatc
551 gtgagggttc aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
576 |
557 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.