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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW263073.1 nt Cyclanthera pedata chloroplast, com... 155030 bp Cyclanthera pedata QL-PLN-00-007 579 bp View
MW274721.1 nt Arctagrostis latifolia voucher CAN:... 1785 bp Arctagrostis latifolia QL-PLN-00-007 620 bp View
MW274722.1 nt Cinna bolanderi voucher UC Taylor 1... 1767 bp Cinna bolanderi QL-PLN-00-007 620 bp View
MW274723.1 nt Cinna bolanderi voucher UC Keil 196... 1774 bp Cinna bolanderi QL-PLN-00-007 620 bp View
MW274724.1 nt Cinna poiformis voucher US:Peterson... 1783 bp Cinna poiformis QL-PLN-00-007 620 bp View
MW274725.1 nt Cyathopus sikkimensis voucher US:So... 1644 bp Cyathopus sikkimensis QL-PLN-00-007 620 bp View
MW274728.1 nt Poa chapmaniana voucher US:Soreng 7... 1816 bp Poa chapmaniana QL-PLN-00-007 616 bp View
MW274730.1 nt Simplicia buchananii voucher AK:AK ... 1807 bp Simplicia buchananii QL-PLN-00-007 620 bp View
MW274732.1 nt Simplicia felix voucher AK:de Lange... 1777 bp Simplicia felix QL-PLN-00-007 620 bp View
MW274733.1 nt Simplicia felix voucher AK:Ogle 473... 1765 bp Simplicia felix QL-PLN-00-007 620 bp View
MW274734.1 nt Simplicia felix voucher CHR:CHR 607... 1776 bp Simplicia felix QL-PLN-00-007 620 bp View
MW274735.1 nt Simplicia laxa voucher AK:de Lange ... 1776 bp Simplicia laxa QL-PLN-00-007 620 bp View
MW274736.1 nt Sylvipoa queenslandica voucher CAN:... 1797 bp Sylvipoa queenslandica QL-PLN-00-007 620 bp View
MW279182.1 nt Amana anhuiensis clone 1 chloroplas... 151573 bp Amana anhuiensis QL-PLN-00-007 567 bp View
MW279183.1 nt Amana sp. 13 QZ-2022 clone Y01 chlo... 151415 bp Amana sp. 13 QZ-2022 QL-PLN-00-007 567 bp View
MW279185.1 nt Amana wanzhensis clone AW31H chloro... 151354 bp Amana wanzhensis QL-PLN-00-007 565 bp View
MW279188.1 nt Amana erythronioides clone 1 chloro... 151699 bp Amana erythronioides QL-PLN-00-007 566 bp View
MW279192.1 nt Amana sp. 12 QZ-2022 clone X01 chlo... 151287 bp Amana sp. 12 QZ-2022 QL-PLN-00-007 568 bp View
MW279193.1 nt Amana wanzhensis clone AW31D chloro... 151354 bp Amana wanzhensis QL-PLN-00-007 565 bp View
MW279194.1 nt Amana wanzhensis clone AW31E chloro... 151428 bp Amana wanzhensis QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.