Match details
Record ID: |
MW274724.1 |
Database: |
nt |
Go to original record |
Description: |
Cinna poiformis voucher US:Peterson 20588 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Cinna poiformis |
Original size: |
1783 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
828 |
1447 |
+ |
620 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgagaaag aagggcttta tacatctaat aaacacgtat agatactgac
301 atagcaaacg attaatcaca gaacctatat tataatatat ggttctttat
351 tcttttttag aatgaaatag aaatgattat gaaataaaaa attaaaaatt
401 cagaattttt tttagaatta ttgtgaatac attccaatcg aatatttagt
451 aatcaaatcc ttcaattcaa agttttgagg tctttaaaaa agtggattaa
501 tcggacgagg acaaagagag agtcccattc tacatgtcaa tactgacaac
551 aatgaaattt ctagtaaaag gaaaatccgt cgactttata agtcgtgagg
601 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
620 |
601 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.