Match details
Record ID: |
MW279183.1 |
Database: |
nt |
Go to original record |
Description: |
Amana sp. 13 QZ-2022 clone Y01 chloroplast, complete genome. |
Taxon: |
Amana sp. 13 QZ-2022 |
Original size: |
151415 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45139 |
45705 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttttttttt ttcaaaaaaa aggataggtg
151 cagagactca atggaagctg ttctaacaaa tggagttgat tacgttacat
201 gcgctagtag ccggaatcct tctatcaaaa ttattgaaaa gatacccgcc
251 ctatatatgt agatatacat actcacatag taaacgattg attaatcgca
301 gcccaaatcc attatatatg aaaaatttaa gaatcattgt gaatctattc
351 cattcgatat tccaatcgaa gttggaggaa gaatcgaata ttaaatgatc
401 aaattattca ttccaaagtc tgatagatct tttgaaaaac cgattattcg
451 aacgagaata aagagagagt cccattctac gtgtcaatac cgacaacaat
501 gaaatttata gtaaaaggaa aatccgtcga ctttaaaagt cgtgagggtt
551 caagtccctc tatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.