Match details
Record ID: |
MW279188.1 |
Database: |
nt |
Go to original record |
Description: |
Amana erythronioides clone 1 chloroplast, complete genome. |
Taxon: |
Amana erythronioides |
Original size: |
151699 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45469 |
46034 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttttttttt caaaaaaaaa agataggtgc
151 agagactcaa tggaagctgt tctaacaaat ggagttgatt acgttacatg
201 cgctagtagc cggaatcctt ctatcaaaat tattgaaaag atacccgccc
251 tatatatgta gatatacata ctcacatagt aaacgattga ttaatcgcag
301 cccaaatcca ttatatatga aaaatttaag aatcattgtg aatctattcc
351 attcgatatt ccaatcgaag ttggaggaag aatcgaatat taaatgatca
401 aattattcat tccaaagtct gatagatctt ttgaaaaacc gattattcga
451 acgagaataa agagagagtc ccattctacg tgtcaatacc gacaacaatg
501 aaatttatag taaaaggaaa atccgtcgac tttaaaagtc gtgagggttc
551 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.