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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT610089.1 nt Thelepogon elegans isolate TK257 ch... 140154 bp Thelepogon elegans QL-PLN-00-007 525 bp View
MT610090.1 nt Rhytachne rottboellioides isolate T... 137047 bp Rhytachne rottboellioides QL-PLN-00-007 528 bp View
MT610091.1 nt Zea diploperennis isolate TK043 chl... 140783 bp Zea diploperennis QL-PLN-00-007 532 bp View
MT610092.1 nt Loxodera bovonei isolate TK520 chlo... 140551 bp Loxodera bovonei QL-PLN-00-007 525 bp View
MT610093.1 nt Mnesithea granularis isolate TK205 ... 140515 bp Hackelochloa granularis QL-PLN-00-007 525 bp View
MT610094.1 nt Loxodera caespitosa isolate TK304 c... 139539 bp Loxodera caespitosa QL-PLN-00-007 527 bp View
MT610095.1 nt Andropogon eucomus isolate TK001 ch... 140492 bp Anatherum eucomum QL-PLN-00-007 525 bp View
MT610096.1 nt Tripsacum australe isolate TK174 ch... 140788 bp Tripsacum australe QL-PLN-00-007 532 bp View
MT610097.1 nt Hyparrhenia rufa isolate TK108 chlo... 138643 bp Hyparrhenia rufa QL-PLN-00-007 530 bp View
MT610098.1 nt Thyrsia inflata isolate TK024 chlor... 140453 bp Thyrsia inflata QL-PLN-00-007 530 bp View
MT610100.1 nt Loxodera bovonei isolate TK536 chlo... 140480 bp Loxodera bovonei QL-PLN-00-007 525 bp View
MT610898.1 nt Catalpa bungei chloroplast, complet... 158238 bp Catalpa bungei QL-PLN-00-007 563 bp View
MT634133.1 nt Salvia yunnanensis plastid, complet... 150829 bp Salvia yunnanensis QL-PLN-00-007 529 bp View
MT634134.1 nt Salvia tiliifolia plastid, complete... 150891 bp Salvia tiliifolia QL-PLN-00-007 564 bp View
MT634135.1 nt Salvia przewalskii plastid, complet... 151316 bp Salvia przewalskii QL-PLN-00-007 529 bp View
MT634141.1 nt Salvia castanea f. tomentosa plasti... 151589 bp Salvia castanea f. tomentosa QL-PLN-00-007 529 bp View
MT634145.1 nt Salvia rosmarinus plastid, complete... 151695 bp Salvia rosmarinus QL-PLN-00-007 567 bp View
MT634149.1 nt Salvia sp. HW-2020 plastid, complet... 152658 bp Salvia sp. HW-2020 QL-PLN-00-007 530 bp View
MT634150.1 nt Salvia castanea f. castanea plastid... 154984 bp Salvia castanea f. castanea QL-PLN-00-007 529 bp View
MT648690.1 nt Cerbera manghas chloroplast, comple... 154461 bp Cerbera manghas QL-PLN-00-007 559 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.