Match details
Record ID: |
MT634141.1 |
Database: |
nt |
Go to original record |
Description: |
Salvia castanea f. tomentosa plastid, complete genome. |
Taxon: |
Salvia castanea f. tomentosa |
Original size: |
151589 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46828 |
47356 |
+ |
529 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa aggataggtg
151 cagagactca atggaagttg ttctaacaaa tggagttgat tgcgccggta
201 gaggaatctt tccacggaaa ctttagaaag gatgaaggat aaacccatct
251 attgaatact atatcaaatg attaatgttg gcccgaatct gtttttttaa
301 tatgaaaatg gaaaaatcga tgtgaattta tttcacgttg aagaataaat
351 cgaatattca tcaactcatt cactccatag ttcgatagat cttttaaaga
401 acttattaat cggacgagaa taaagataga gtcccattct acatgtcaat
451 accggcaaca atgaaattta tagtaagagg aaaatccgtc gactttaaaa
501 atcgtgaggg ttcaagtccc tctatcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.38e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
529 |
510 |
2.38e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.