Match details
Record ID: |
MT610094.1 |
Database: |
nt |
Go to original record |
Description: |
Loxodera caespitosa isolate TK304 chloroplast, partial genome. |
Taxon: |
Loxodera caespitosa |
Original size: |
139539 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48210 |
48736 |
+ |
527 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaaacaag tggttctcaa
151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gaagtaataa cgattaatca cagaacccat attataatat
251 aggttcttta ttttattttt agaatgaaat taggaatgat tatgaaatag
301 aaaattcata atttttttta gaattattgt gaatctattc caatcgaata
351 ttgagtaatc aaatccttca attcattgtt ttcgagatct tttaaaaagt
401 ggattaatcg gacgaggata aagagagagt cccattctac atgtcaatac
451 tgacaacaat gaaatttata gtaaaaggaa aatccgtcga ctttataagt
501 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
527 |
508 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.