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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT610043.1 nt Euclasta condylotricha isolate TK23... 138352 bp Euclasta condylotricha QL-PLN-00-007 525 bp View
MT610044.1 nt Elymandra grallata isolate TK254 ch... 139871 bp Elymandra grallata QL-PLN-00-007 525 bp View
MT610045.1 nt Microstegium vimineum isolate TK124... 140726 bp Microstegium vimineum QL-PLN-00-007 525 bp View
MT610047.1 nt Arundinella nepalensis isolate TK11... 140399 bp Arundinella nepalensis QL-PLN-00-007 525 bp View
MT610048.1 nt Dimeria lawsonii isolate TK508 chlo... 140764 bp Dimeria lawsonii QL-PLN-00-007 525 bp View
MT610049.1 nt Bothriochloa bladhii isolate TK087 ... 138206 bp Bothriochloa bladhii QL-PLN-00-007 525 bp View
MT610050.1 nt Urelytrum agropyroides isolate TK22... 140259 bp Urelytrum agropyroides QL-PLN-00-007 525 bp View
MT610051.1 nt Cymbopogon martinii isolate TK048 c... 139839 bp Cymbopogon martinii QL-PLN-00-007 529 bp View
MT610053.1 nt Elionurus tripsacoides isolate TK19... 140250 bp Elionurus tripsacoides QL-PLN-00-007 525 bp View
MT610054.1 nt Hemarthria altissima isolate TK036 ... 140437 bp Hemarthria altissima QL-PLN-00-007 525 bp View
MT610055.1 nt Hemarthria compressa isolate TK111 ... 140418 bp Hemarthria compressa QL-PLN-00-007 525 bp View
MT610056.1 nt Diheteropogon hagerupii isolate TK1... 139112 bp Diheteropogon hagerupii QL-PLN-00-007 530 bp View
MT610057.1 nt Oxyrhachis gracillima isolate TK303... 140497 bp Oxyrhachis gracillima QL-PLN-00-007 526 bp View
MT610058.1 nt Apluda mutica isolate TK100 chlorop... 140556 bp Apluda mutica QL-PLN-00-007 525 bp View
MT610059.1 nt Jardinea congoensis isolate TK298 c... 140427 bp Jardinea congoensis QL-PLN-00-007 525 bp View
MT610060.1 nt Tripsacum peruvianum isolate TK117 ... 141045 bp Tripsacum peruvianum QL-PLN-00-007 527 bp View
MT610062.1 nt Ischaemum rugosum isolate TK186 chl... 140014 bp Ischaemum rugosum QL-PLN-00-007 529 bp View
MT610063.1 nt Hemarthria uncinata isolate TK071 c... 140448 bp Hemarthria uncinata QL-PLN-00-007 525 bp View
MT610064.1 nt Tripsacum pilosum isolate TK173 chl... 140923 bp Tripsacum pilosum QL-PLN-00-007 527 bp View
MT610065.1 nt Trachypogon chevalieri isolate TK28... 140727 bp Trachypogon chevalieri QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.