Match details
Record ID: |
MT610051.1 |
Database: |
nt |
Go to original record |
Description: |
Cymbopogon martinii isolate TK048 chloroplast, partial genome. |
Taxon: |
Cymbopogon martinii |
Original size: |
139839 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48461 |
48989 |
+ |
529 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcaa agaacccata ttataatata
251 ggttctttat tttattttta gaatgaaatt aggaatgatt atgaaataga
301 aaattcataa ttttttgaga attattgtga atctattcca atcgaatatt
351 gagtaatcaa atccttcaat tcattgtttt caagatcttt aaaaaaaaaa
401 gtggattaat cggacgagga taaagagaga gtcccattct acatgtcaat
451 actgacaaca atgaaatttc tagtaaaagg aaaatccgtc gactttataa
501 gtcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.38e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
529 |
510 |
2.38e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.