Match details
Record ID: |
MT610047.1 |
Database: |
nt |
Go to original record |
Description: |
Arundinella nepalensis isolate TK115 chloroplast, partial genome. |
Taxon: |
Arundinella nepalensis |
Original size: |
140399 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49287 |
49811 |
+ |
525 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac ggaacccata ttataatata
251 ggttctttat tttattttta gaatgaaatt aggaatgatt atgaaataga
301 aaattctaaa tttttttaga attattgtga atctattcca atcgaatatt
351 gagtaatcaa atccttcaat tcattgtttt cgagatcttt taaaaagtgg
401 attaatcggg cgaggataaa gagagagtcc cattctacat gtcaatactg
451 acagcaatga aatttctagt aaaaggaaaa tccgtcgact ttataagtcg
501 tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.36e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
525 |
506 |
2.36e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.