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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT507771.1 nt Pseudocerastium stellarioides vouch... 148741 bp Pseudocerastium stellarioides QL-PLN-00-007 598 bp View
MT513319.1 nt Tetrastigma loheri isolate 3932 tRN... 1012 bp Tetrastigma loheri QL-PLN-00-007 581 bp View
MT513320.1 nt Tetrastigma stenophyllum isolate 39... 1013 bp Tetrastigma stenophyllum QL-PLN-00-007 581 bp View
MT513321.1 nt Tetrastigma philippinense isolate 3... 1013 bp Tetrastigma philippinense QL-PLN-00-007 581 bp View
MT513322.1 nt Tetrastigma loheri isolate 4007 tRN... 1012 bp Tetrastigma loheri QL-PLN-00-007 581 bp View
MT513323.1 nt Tetrastigma loheri isolate 4026 tRN... 1012 bp Tetrastigma loheri QL-PLN-00-007 581 bp View
MT513324.1 nt Tetrastigma loheri isolate 4033 tRN... 1012 bp Tetrastigma loheri QL-PLN-00-007 581 bp View
MT526777.1 nt Amaranthus blitum chloroplast, comp... 150596 bp Amaranthus blitum QL-PLN-00-007 618 bp View
MT526781.1 nt Amaranthus standleyanus voucher 119... 150568 bp Amaranthus standleyanus QL-PLN-00-007 615 bp View
MT526782.1 nt Amaranthus standleyanus voucher 743... 150569 bp Amaranthus standleyanus QL-PLN-00-007 615 bp View
MT526784.1 nt Amaranthus spinosus voucher 113 chl... 150524 bp Amaranthus spinosus QL-PLN-00-007 595 bp View
MT537168.1 nt Salvia yangii chloroplast, complete... 151473 bp Salvia yangii QL-PLN-00-007 564 bp View
MT559304.1 nt Amaranthus tuberculatus voucher GZW... 150680 bp Amaranthus tuberculatus QL-PLN-00-007 614 bp View
MT559305.1 nt Amaranthus hybridus voucher BJ chlo... 150690 bp Amaranthus hybridus QL-PLN-00-007 595 bp View
MT572344.1 nt Fagopyrum esculentum subsp. ancestr... 159600 bp Fagopyrum esculentum subsp. ancestrale QL-PLN-00-007 577 bp View
MT576633.1 nt Phragmites australis isolate DR chl... 137647 bp Phragmites australis QL-PLN-00-007 617 bp View
MT576634.1 nt Phragmites australis isolate SR chl... 137660 bp Phragmites australis QL-PLN-00-007 617 bp View
MT576658.1 nt Chimonobambusa hirtinoda chloroplas... 139561 bp Chimonobambusa hirtinoda QL-PLN-00-007 614 bp View
MT593357.1 nt Musa acuminata var. chinensis chlor... 170402 bp Musa acuminata var. chinensis QL-PLN-00-007 594 bp View
MT610042.1 nt Hyparrhenia hirta isolate TK095 chl... 139396 bp Hyparrhenia hirta QL-PLN-00-007 530 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.