Match details
Record ID: |
MT526784.1 |
Database: |
nt |
Go to original record |
Description: |
Amaranthus spinosus voucher 113 chloroplast, complete genome. |
Taxon: |
Amaranthus spinosus |
Original size: |
150524 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47399 |
47993 |
+ |
595 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggag
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggtaat cctgagccaa ctcctttttc aaaagtaaaa aaaaaaaata
151 cggattcaga aagcaagaat aaaaaaaaag gataggtgca gagactcaaa
201 ggaagctgtt ctaacaaatg gagttgattg tgctgggttg ttcgaaatta
251 atgacacttc gaatctattc tgtatttcta tttttagaat ttttagatat
301 ttcttatttc tagataatat agaatatgaa attttctaga aataaaaatg
351 aatatgaaaa aatggaagaa tttttgtgac tctatttcaa gttgaaaaaa
401 gaatcaaata ttcatcaaat cattcactcc atagtctgat agatctttct
451 ttgaaagaac cggttaatcg gttactcgga cgagaataaa gatagagtcc
501 cattatacat gtcaatactg acaacaatga aatttatagt acgaggaaaa
551 tccgtcgact ttaaaaatcg tgagggttca agtccctcta tcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
595 |
576 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.