Match details
Record ID: |
MT572344.1 |
Database: |
nt |
Go to original record |
Description: |
Fagopyrum esculentum subsp. ancestrale chloroplast, complete genome. |
Taxon: |
Fagopyrum esculentum subsp. ancestrale |
Original size: |
159600 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48167 |
48743 |
+ |
577 bp |
|
1 cgaaatcggt agacgctacg gacttaatta ggttgagcct tagtagggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aatcaaaaaa
101 cgggtaatcc tgagccaact cctgttttcc aaaagaaaga ataaatacag
151 gataggtgca gagactcaat ggaagctgtt ctaacaaaat ggagttgact
201 gtcttgcgtt gttataagaa ctcttccgtc gaaactcaaa aaaggatgaa
251 gaataaatgt atacgcatac atacgtcaat ataaaatact aaaaaaaaga
301 aaaagtcggg tcgttatcaa tattttttat tttatgacta tgaaaaaagg
351 aagaattgtt atgaatcgat ttcaagatga agaaagaatc gaatattcgt
401 ttagtaaatt caagcattta ctcccccgtc tgatagatct tttgaaaaac
451 cgatccatcg gatgagaatg aagatagagt cccattctac gtgtcaatcc
501 tgacaacaaa gaaatttata gtaagaggaa aatccgtcga ctttataaat
551 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
577 |
558 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.