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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN564928.1 nt Rheum racemiferum chloroplast, comp... 161682 bp Rheum racemiferum QL-PLN-00-007 610 bp View
MN564930.1 nt Rumex crispus chloroplast, complete... 161292 bp Rumex crispus QL-PLN-00-007 599 bp View
MN564931.1 nt Oxyria digyna chloroplast, complete... 160698 bp Oxyria digyna QL-PLN-00-007 602 bp View
MN604379.1 nt Dysosma versipellis chloroplast, co... 156735 bp Dysosma versipellis QL-PLN-00-007 541 bp View
MN687904.1 nt Ocimum tenuiflorum chloroplast, com... 152419 bp Ocimum tenuiflorum QL-PLN-00-007 548 bp View
MN688203.1 nt Gigantochloa verticillata chloropla... 139489 bp Gigantochloa verticillata QL-PLN-00-007 613 bp View
MN689809.1 nt Taraxacum coreanum chloroplast, com... 151338 bp Taraxacum coreanum QL-PLN-00-007 527 bp View
MN723867.1 nt Indofevillea khasiana voucher lpssy... 159238 bp Indofevillea khasiana QL-PLN-00-007 603 bp View
MN745200.1 nt Lilium duchartrei chloroplast, comp... 152566 bp Lilium duchartrei QL-PLN-00-007 609 bp View
MN745201.1 nt Lilium matangense chloroplast, comp... 152402 bp Lilium matangense QL-PLN-00-007 609 bp View
MN745202.1 nt Lilium xanthellum chloroplast, comp... 152307 bp Lilium xanthellum QL-PLN-00-007 609 bp View
MN756858.1 nt Hylomecon japonica var. dissecta vo... 159942 bp Hylomecon japonica var. dissecta QL-PLN-00-007 597 bp View
MN780987.1 nt Eragrostis tef isolate T66-2 plasti... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780988.1 nt Eragrostis tef isolate T81-1 plasti... 134412 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780989.1 nt Eragrostis tef isolate T34-1 plasti... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780990.1 nt Eragrostis tef isolate T56-2 plasti... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780991.1 nt Eragrostis tef isolate T36-1 plasti... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780992.1 nt Eragrostis tef isolate t20 chloropl... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780993.1 nt Eragrostis tef isolate T24-2 plasti... 134421 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780994.1 nt Eragrostis tef isolate T43-2 plasti... 134419 bp Eragrostis tef QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.