Match details
Record ID: |
MN564928.1 |
Database: |
nt |
Go to original record |
Description: |
Rheum racemiferum chloroplast, complete genome. |
Taxon: |
Rheum racemiferum |
Original size: |
161682 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
50026 |
50635 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttaattg atttgagcct tagtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aataaaaaaa
101 atgggcaatc ctgagccaac tccttctttc caaaaggaag aataaaaagg
151 ataggtgcag agactcaatg gaagctgttc taacaaatgg agttgacgat
201 cttgcgttat tataaaaatt attccatcga aactccaaaa aagatgaaga
251 ataaacctat acgcagacgt acttaaatat aaatactaac tataataact
301 atatattata taaaatataa aaaaattaaa ttaaaaaata ttgatgacga
351 cccgcatttt ttttcatgac tatgaaaaaa tggaagaatt gttgtgaagc
401 gattccaagt tgaagaaaga gtcgaatatg cgtttaataa attaaagcat
451 ttattccccg gtctgagaga tcttttgaag aaccgatcca tcggatgaga
501 atgaagatag agtcccattc tacgtgtcaa tcctgacaac aatgaaattt
551 atagtaagag gaaaatccgt cgactttata aatcgtgagg gttcaagtcc
601 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.