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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN309825.1 nt Festuca rubra subsp. rubra chloropl... 133804 bp Festuca rubra subsp. rubra QL-PLN-00-007 610 bp View
MN309826.1 nt Festuca rubra subsp. fallax chlorop... 133841 bp Festuca rubra subsp. fallax QL-PLN-00-007 610 bp View
MN310559.1 nt Drepanostachyum semiorbiculatum chl... 139636 bp Drepanostachyum semiorbiculatum QL-PLN-00-007 614 bp View
MN310560.1 nt Yushania niitakayamensis chloroplas... 139597 bp Yushania niitakayamensis QL-PLN-00-007 614 bp View
MN313430.1 nt Grielum grandiflorum plastid, compl... 158189 bp Grielum grandiflorum QL-PLN-00-007 581 bp View
MN315508.1 nt Bougainvillea spectabilis chloropla... 154520 bp Bougainvillea spectabilis QL-PLN-00-007 615 bp View
MN334533.1 nt Sonchus leptocephalus chloroplast, ... 152406 bp Sonchus leptocephalus QL-PLN-00-007 523 bp View
MN341012.1 nt Salvia yunnanensis chloroplast, com... 151338 bp Salvia yunnanensis QL-PLN-00-007 529 bp View
MN342163.1 nt Saccharum perrieri voucher TAN:NOP1... 141071 bp Saccharum perrieri QL-PLN-00-007 526 bp View
MN380671.1 nt Cornus florida var. urbiniana isola... 157584 bp Cornus florida var. urbiniana QL-PLN-00-007 587 bp View
MN383192.1 nt Hemiphragma heterophyllum isolate B... 152707 bp Hemiphragma heterophyllum QL-PLN-00-007 563 bp View
MN395662.1 nt Buddleja alternifolia chloroplast, ... 154357 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
MN443952.1 nt Meconopsis punicea isolate Sample S... 153260 bp Meconopsis punicea QL-PLN-00-007 600 bp View
MN480765.1 nt Catabrosa capusii voucher 5_1 tRNA-... 919 bp Catabrosa capusii QL-PLN-00-007 611 bp View
MN480766.1 nt Catabrosa pseudairoides voucher 4_1... 917 bp Catabrosa pseudairoides QL-PLN-00-007 611 bp View
MN480769.1 nt Catabrosa minor voucher 3_1 tRNA-Le... 917 bp Catabrosa minor QL-PLN-00-007 611 bp View
MN480772.1 nt Phippsia algida subsp. concinna vou... 902 bp Phippsia algida subsp. concinna QL-PLN-00-007 611 bp View
MN480773.1 nt Phippsia algida subsp. concinna vou... 911 bp Phippsia algida subsp. concinna QL-PLN-00-007 611 bp View
MN480774.1 nt Puccinellia hauptiana voucher Alt78... 906 bp Puccinellia hauptiana QL-PLN-00-007 611 bp View
MN480777.1 nt Puccinellia tenuiflora voucher Alt2... 906 bp Puccinellia tenuiflora QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.