Match details
Record ID: |
MN480765.1 |
Database: |
nt |
Go to original record |
Description: |
Catabrosa capusii voucher 5_1 tRNA-Leu gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Catabrosa capusii |
Original size: |
919 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
611 |
+ |
611 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaaccagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgacaagg aagggcgtta tacatctaag aaatacctat agatactgcc
301 atagcaaacg attaatcaca gaacccatat tataatatag gttctttatt
351 cttttttaga atgaaataga aatgattatg aaataaaaaa ttcataattt
401 ttttagaatt attgtgaatc cattcccatc gaatatttag taatcaaatc
451 cttcaattca aagttttgag gtctttaaaa aagtagatta atcgaacgag
501 gacaaagaga gagtcccatt ctacatgtca atactgacaa caatgaaatt
551 tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601 cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
611 |
592 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.