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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN180104.1 nt Cenchrus americanus chloroplast, co... 138119 bp Cenchrus americanus QL-PLN-00-007 613 bp View
MN192191.2 nt Physalis philadelphica cultivar Wil... 156804 bp Physalis philadelphica QL-PLN-00-007 571 bp View
MN202596.1 nt Calligonum aphyllum voucher IBSC:TL... 161261 bp Calligonum aphyllum QL-PLN-00-007 594 bp View
MN202601.1 nt Calligonum caput-medusae voucher XJ... 162043 bp Calligonum caput-medusae QL-PLN-00-007 594 bp View
MN202606.1 nt Calligonum ebinuricum voucher XJBI:... 161364 bp Calligonum ebinuricum QL-PLN-00-007 594 bp View
MN202607.1 nt Calligonum ebinuricum voucher XJBI:... 161290 bp Calligonum ebinuricum QL-PLN-00-007 594 bp View
MN202610.1 nt Calligonum junceum voucher XJBI:FMD... 162081 bp Calligonum junceum QL-PLN-00-007 594 bp View
MN202613.1 nt Calligonum korlaense voucher XJBI:5... 161316 bp Calligonum korlaense QL-PLN-00-007 594 bp View
MN205550.1 nt Gelidocalamus xunwuensis chloroplas... 139680 bp Gelidocalamus xunwuensis QL-PLN-00-007 614 bp View
MN218647.1 nt Calligonum roborowskii voucher XJBI... 161329 bp Calligonum roborowskii QL-PLN-00-007 594 bp View
MN218649.1 nt Calligonum rubicundum voucher XJBI:... 161396 bp Calligonum rubicundum QL-PLN-00-007 594 bp View
MN218653.1 nt Calligonum yengisaricum voucher XJB... 161417 bp Calligonum yengisaricum QL-PLN-00-007 594 bp View
MN223720.1 nt Utricularia amethystina voucher VM2... 150332 bp Utricularia amethystina QL-PLN-00-007 546 bp View
MN223721.1 nt Utricularia amethystina voucher VM1... 150115 bp Utricularia amethystina QL-PLN-00-007 546 bp View
MN223722.1 nt Utricularia amethystina voucher CM1... 150020 bp Utricularia amethystina QL-PLN-00-007 555 bp View
MN262642.1 nt Physochlaina physaloides chloroplas... 156413 bp Physochlaina physaloides QL-PLN-00-007 571 bp View
MN268502.1 nt Eragrostis pilosa chloroplast, comp... 134815 bp Eragrostis pilosa QL-PLN-00-007 605 bp View
MN309822.1 nt Festuca brevipila chloroplast, comp... 133331 bp Festuca brevipila QL-PLN-00-007 606 bp View
MN309823.1 nt Festuca rubra subsp. litoralis chlo... 133814 bp Festuca rubra subsp. litoralis QL-PLN-00-007 610 bp View
MN309824.1 nt Festuca ovina chloroplast, complete... 133508 bp Festuca ovina QL-PLN-00-007 610 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.