Match details
Record ID: |
MN309824.1 |
Database: |
nt |
Go to original record |
Description: |
Festuca ovina chloroplast, complete genome. |
Taxon: |
Festuca ovina |
Original size: |
133508 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45508 |
46117 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg aggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gaattaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttttagaaag aagggcttta tacacctaat aaacacgtat agatactgac
301 gattaatcac ggaacccata ttataatata ggttctttat tcttttttag
351 aatgaaattt gaaatagaaa tgattatgaa ataaaaaatt tagaattttt
401 tgtagaatta tttggattcc attccaattg aatatttagt aatcaaatcc
451 ttcaattcaa agttttgagg tctttaaaac agtggattaa tcggacgagg
501 acaaagagag agtcccattc tacatgtcaa tactgacaac aatgaaattt
551 ctagtaaaag gaaaatccgt cgactttata agtcgtgagg gttcaagtcc
601 ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.