European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK141621.1 nt Anthospermum perrieri isolate cY74 ... 1683 bp Anthospermum perrieri QL-PLN-00-007 591 bp View
MK141628.1 nt Anthospermum thymoides subsp. thymo... 1693 bp Anthospermum thymoides subsp. thymoides QL-PLN-00-007 591 bp View
MK141629.1 nt Anthospermum rigidum isolate aL47 t... 1727 bp Anthospermum rigidum QL-PLN-00-007 591 bp View
MK141630.1 nt Anthospermum rigidum isolate aL48 t... 1703 bp Anthospermum rigidum QL-PLN-00-007 591 bp View
MK141631.1 nt Anthospermum herbaceum isolate aL63... 1727 bp Anthospermum herbaceum QL-PLN-00-007 590 bp View
MK141632.1 nt Anthospermum spathulatum isolate aL... 1700 bp Anthospermum spathulatum QL-PLN-00-007 590 bp View
MK141633.1 nt Anthospermum aethiopicum isolate aL... 1689 bp Anthospermum aethiopicum QL-PLN-00-007 591 bp View
MK141634.1 nt Anthospermum aethiopicum isolate aL... 1700 bp Anthospermum aethiopicum QL-PLN-00-007 591 bp View
MK141635.1 nt Anthospermum spathulatum isolate aL... 1438 bp Anthospermum spathulatum QL-PLN-00-007 591 bp View
MK141636.1 nt Anthospermum aethiopicum isolate aL... 1760 bp Anthospermum aethiopicum QL-PLN-00-007 591 bp View
MK141637.1 nt Anthospermum galioides subsp. refle... 1674 bp Anthospermum galioides subsp. reflexifolium QL-PLN-00-007 591 bp View
MK141641.1 nt Anthospermum sp. Bremer et al. 4351... 1724 bp Anthospermum sp. Bremer et al. 4351 QL-PLN-00-007 590 bp View
MK141642.1 nt Anthospermum welwitschii isolate cX... 1707 bp Anthospermum welwitschii QL-PLN-00-007 588 bp View
MK141643.1 nt Anthospermum whyteanum isolate cX96... 1745 bp Anthospermum whyteanum QL-PLN-00-007 592 bp View
MK141664.1 nt Galopina aspera isolate cX98 tRNA-T... 1716 bp Galopina aspera QL-PLN-00-007 588 bp View
MK141665.1 nt Galopina circaeoides isolate cY6 tR... 1717 bp Galopina circaeoides QL-PLN-00-007 588 bp View
MK141666.1 nt Galopina crocyllioides isolate cY81... 1647 bp Galopina crocyllioides QL-PLN-00-007 588 bp View
MK141667.1 nt Galopina tomentosa isolate cX80 trn... 1709 bp Galopina tomentosa QL-PLN-00-007 587 bp View
MK141668.1 nt Nenax acerosa isolate cY61 trnT-trn... 1094 bp Nenax acerosa QL-PLN-00-007 591 bp View
MK141669.1 nt Nenax acerosa isolate cY62 tRNA-Thr... 1708 bp Nenax acerosa QL-PLN-00-007 591 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.