Match details
Record ID: |
MK141665.1 |
Database: |
nt |
Go to original record |
Description: |
Galopina circaeoides isolate cY6 tRNA-Thr (trnT(UGU)) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL(UAA)) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF(GAA)) gene, partial sequence; chloroplast. |
Taxon: |
Galopina circaeoides |
Original size: |
1717 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
767 |
1354 |
+ |
588 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctgag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aggttcagaa
151 agtgaaaaaa aaagggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt ggctgcggta gtcgagaagt ctttccatca aaaattcata
251 aagtataagt attaaggatg aagtgaagga taaacgtata tacatacgta
301 gtgaatagta tattaaatga gtaatgataa cccgaatgaa tctttatttt
351 ttctataaaa aacgaaagaa ttgttcttaa tagattccac gtttagaaaa
401 gaatcgaata ttcattgatc aaatgattca ctccatagtc tgatagatcc
451 tttcacgaac tgattaatcg gacgagaata aagatagagt cccattctac
501 atgtcaatgc cggcaacaat gaaatttata gttaagagga aaatccgtcg
551 acttttaaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
588 |
569 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.