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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH181233.1 nt Schizachyrium microstachyum isolate... 139249 bp Schizachyrium microstachyum QL-PLN-00-007 525 bp View
MH181234.1 nt Schizachyrium microstachyum isolate... 139263 bp Schizachyrium microstachyum QL-PLN-00-007 525 bp View
MH181236.1 nt Andropogon brazzae isolate TK564 ch... 139774 bp Andropogon brazzae QL-PLN-00-007 525 bp View
MH181237.1 nt Andropogon mannii isolate TK483 chl... 133726 bp Andropogon mannii QL-PLN-00-007 530 bp View
MH185800.1 nt Schizachyrium delavayi chloroplast,... 139902 bp Schizachyrium delavayi QL-PLN-00-007 525 bp View
MH196562.1 nt Fagopyrum dibotrys chloroplast, com... 159325 bp Fagopyrum dibotrys QL-PLN-00-007 577 bp View
MH244906.1 nt Fritillaria cirrhosa chloroplast, c... 151998 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
MH244910.1 nt Fritillaria taipaiensis chloroplast... 151707 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MH244914.1 nt Fritillaria thunbergii chloroplast,... 152160 bp Fritillaria thunbergii QL-PLN-00-007 607 bp View
MH256801.1 nt Gomphogyne cissiformis var. cissifo... 157334 bp Gomphogyne cissiformis var. cissiformis QL-PLN-00-007 608 bp View
MH286310.1 nt Guapira discolor chloroplast, parti... 153813 bp Guapira discolor QL-PLN-00-007 587 bp View
MH286315.1 nt Phytolacca americana var. americana... 155094 bp Phytolacca americana var. americana QL-PLN-00-007 617 bp View
MH286320.1 nt Limeum aethiopicum chloroplast, par... 133202 bp Limeum aethiopicum QL-PLN-00-007 552 bp View
MH286325.1 nt Pharnaceum aurantium tRNA-Ser (trnS... 6278 bp Pharnaceum aurantium QL-PLN-00-007 593 bp View
MH286338.1 nt Sarcobatus vermiculatus voucher M. ... 152066 bp Sarcobatus vermiculatus QL-PLN-00-007 588 bp View
MH286351.1 nt Hypertelis spergulacea tRNA-Ser (tr... 12475 bp Hypertelis spergulacea QL-PLN-00-007 587 bp View
MH394349.1 nt Panicum incomtum chloroplast, compl... 139999 bp Panicum incomtum QL-PLN-00-007 609 bp View
MH394350.1 nt Panicum incomtum chloroplast, compl... 139986 bp Panicum incomtum QL-PLN-00-007 609 bp View
MH394351.1 nt Panicum incomtum chloroplast, compl... 139999 bp Panicum incomtum QL-PLN-00-007 609 bp View
MH394379.1 nt Indosasa sinica chloroplast, comple... 139740 bp Indosasa sinica QL-PLN-00-007 614 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.