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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH181191.1 nt Andropogon gracilis isolate TK425 c... 139288 bp Andropogon gracilis QL-PLN-00-007 550 bp View
MH181192.1 nt Hyparrhenia dichroa isolate TK579 c... 138683 bp Hyparrhenia dichroa QL-PLN-00-007 530 bp View
MH181193.1 nt Andropogon fastigiatus isolate TK50... 138654 bp Diectomis fastigiata QL-PLN-00-007 525 bp View
MH181194.1 nt Andropogon crossotos isolate TK708 ... 139792 bp Andropogon crossotos QL-PLN-00-007 525 bp View
MH181195.1 nt Hyparrhenia mobukensis isolate TK76... 139096 bp Hyparrhenia mobukensis QL-PLN-00-007 530 bp View
MH181196.1 nt Exotheca abyssinica isolate TK211 c... 139230 bp Exotheca abyssinica QL-PLN-00-007 530 bp View
MH181197.1 nt Andropogon gracilis isolate TK424 c... 139300 bp Andropogon gracilis QL-PLN-00-007 550 bp View
MH181198.1 nt Andropogon chrysostachyus isolate T... 135908 bp Andropogon chrysostachyus QL-PLN-00-007 530 bp View
MH181199.1 nt Hyparrhenia anemopaegma isolate TK7... 138502 bp Hyparrhenia anemopaegma QL-PLN-00-007 533 bp View
MH181200.1 nt Andropogon brachystachyus isolate T... 140766 bp Anatherum brachystachyum QL-PLN-00-007 527 bp View
MH181201.1 nt Schizachyrium lomaense isolate TK76... 138660 bp Schizachyrium lomaense QL-PLN-00-007 539 bp View
MH181203.1 nt Andropogon distachyos isolate TK396... 138811 bp Andropogon distachyos QL-PLN-00-007 531 bp View
MH181204.1 nt Andropogon ligulatus isolate TK481 ... 140511 bp Anatherum ligulatum QL-PLN-00-007 525 bp View
MH181205.1 nt Schizachyrium cubense isolate TK755... 139130 bp Schizachyrium cubense QL-PLN-00-007 530 bp View
MH181206.1 nt Andropogon laxatus isolate TK539 ch... 140441 bp Andropogon laxatus QL-PLN-00-007 525 bp View
MH181207.1 nt Schizachyrium spicatum isolate TK69... 139291 bp Schizachyrium spicatum QL-PLN-00-007 525 bp View
MH181208.1 nt Schizachyrium salzmannii isolate TK... 139775 bp Schizachyrium salzmannii QL-PLN-00-007 531 bp View
MH181209.1 nt Schizachyrium spicatum isolate TK69... 139185 bp Schizachyrium spicatum QL-PLN-00-007 526 bp View
MH181210.1 nt Andropogon leprodes isolate TK719 c... 138888 bp Andropogon leprodes QL-PLN-00-007 525 bp View
MH181211.1 nt Andropogon gayanus isolate TK415 ch... 138699 bp Andropogon gayanus QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.