Match details
Record ID: |
MH181209.1 |
Database: |
nt |
Go to original record |
Description: |
Schizachyrium spicatum isolate TK695 chloroplast, complete genome. |
Taxon: |
Schizachyrium spicatum |
Original size: |
139185 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48284 |
48809 |
+ |
526 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac agaaccctat attataatat
251 aggttcttta ttttattttt agaatgaaat taggaaggat tatgaaatag
301 aaaattcata atttttttag aattattgtg aatctattcc aatcgaatat
351 tgagtaatca aatccttcaa ttcattgttt tcgagatctt ttaaaaagtg
401 gattaatcgg acgaggataa agagagagtc ccattctaca tgtcaatact
451 gacaacaatg aaatttctag taaaaggaaa atccgtcgac tttataagtc
501 gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
526 |
507 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.