Match details
Record ID: |
MH181193.1 |
Database: |
nt |
Go to original record |
Description: |
Andropogon fastigiatus isolate TK501 chloroplast, complete genome. |
Taxon: |
Diectomis fastigiata |
Original size: |
138654 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47174 |
47698 |
+ |
525 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac agaacccata ttatagtata
251 ggttctttat ttgattttta gaatgaaatt aggaaggatt atgaaataga
301 aaattcataa tttttttcga attattgtga atctattcca atcgaatatt
351 gagtaatcaa atccttcaat tcattgtttt cgagatcttt aaaaaagtgg
401 attaatcgga cgaggataaa gagagagtcc cattctacat gtcaatactg
451 acaacaatga aatttctagt aaaaggaaaa tccgtcgact ttataagtcg
501 tgagggttca agtccctcta tcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.36e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
525 |
506 |
2.36e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.