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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG963272.1 nt Tonduzia stenophylla chloroplast, p... 128886 bp Tonduzia stenophylla QL-PLN-00-007 565 bp View
MG977438.1 nt Rehmannia glutinosa cultivar Jiwhan... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MG977439.1 nt Rehmannia glutinosa isolate IM16053... 153680 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MH011354.1 nt Notholirion macrophyllum voucher DY... 152143 bp Notholirion macrophyllum QL-PLN-00-007 613 bp View
MH019242.1 nt Physalis peruviana chloroplast, com... 156706 bp Physalis peruviana QL-PLN-00-007 576 bp View
MH029495.1 nt Lilium pardalinum chloroplast, comp... 151969 bp Lilium pardalinum QL-PLN-00-007 607 bp View
MH036235.1 nt Eriachne aristidea chloroplast, com... 134521 bp Eriachne aristidea QL-PLN-00-007 606 bp View
MH036236.1 nt Eriachne aristidea chloroplast, com... 134546 bp Eriachne aristidea QL-PLN-00-007 606 bp View
MH036237.1 nt Eriachne armittii chloroplast, comp... 134772 bp Eriachne armittii QL-PLN-00-007 606 bp View
MH036239.1 nt Eriachne avenacea chloroplast, comp... 134727 bp Eriachne avenacea QL-PLN-00-007 597 bp View
MH036244.1 nt Eriachne ciliata chloroplast, compl... 134782 bp Eriachne ciliata QL-PLN-00-007 597 bp View
MH036245.1 nt Eriachne ciliata chloroplast, compl... 134737 bp Eriachne ciliata QL-PLN-00-007 597 bp View
MH036248.1 nt Eriachne glauca chloroplast, comple... 134843 bp Eriachne glauca QL-PLN-00-007 606 bp View
MH036249.1 nt Eriachne glauca chloroplast, comple... 134825 bp Eriachne glauca QL-PLN-00-007 606 bp View
MH036250.1 nt Eriachne glauca chloroplast, partia... 134823 bp Eriachne glauca QL-PLN-00-007 606 bp View
MH036252.1 nt Eriachne major chloroplast, complet... 134736 bp Eriachne major QL-PLN-00-007 560 bp View
MH036254.1 nt Eriachne melicacea chloroplast, com... 134819 bp Eriachne melicacea QL-PLN-00-007 602 bp View
MH036255.1 nt Eriachne melicacea chloroplast, com... 134867 bp Eriachne melicacea QL-PLN-00-007 602 bp View
MH036256.1 nt Eriachne mucronata chloroplast, com... 135080 bp Eriachne mucronata QL-PLN-00-007 597 bp View
MH036257.1 nt Eriachne nodosa chloroplast, partia... 134676 bp Eriachne nodosa QL-PLN-00-007 560 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.