Match details
Record ID: |
MH036252.1 |
Database: |
nt |
Go to original record |
Description: |
Eriachne major chloroplast, complete genome. |
Taxon: |
Eriachne major |
Original size: |
134736 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46482 |
47041 |
+ |
560 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ccacttttga aaaacaagcg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga ggtaattacg ttgtgttggt agcgaaactc cctctaaatt
251 agagaaagaa gggctttata catctaatac acatgtatag atactggcat
301 agcaaaccaa aggattaatc acagaatcct atatcataat ataggttctt
351 tatttctttt tgaaaatgaa attcagaatt atattgagta atcaaatcct
401 tcaattcatt gtttttgaga tcttttaaaa agtggattaa tcggacgagg
451 ataaagagag agtcccattc tacatgtcaa tactgacaac aatgaaattt
501 ctagtaaaag gaaaatccgt cgactttata agttgtgagg gttcaagtcc
551 ctctatcccc
View other 9 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
560 |
541 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.