Match details
Record ID: |
MH036244.1 |
Database: |
nt |
Go to original record |
Description: |
Eriachne ciliata chloroplast, complete genome. |
Taxon: |
Eriachne ciliata |
Original size: |
134782 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46568 |
47164 |
+ |
597 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ccacttttga aaaacaagcg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga ggtaattacg ttgtgttggt agcgaaactc cctctaaatt
251 agagaaagaa gggctttata catctaatac acacgtatgg atactggcat
301 agcaaaccaa aggattaatc acagaattct atatcataat ataggttctt
351 tatttatttt tgaaaatgaa attcagaatt attatgaaat agaaaattct
401 gaatccattc tactcgaaca ttgagtaatc aaatccttca attcattgtt
451 tttgagatct tttaaaaagt ggattaatcg gacgaggata aagagagagt
501 cccattctac atgtcaatac tgacaacaat gaaatttcta gtaaaaggaa
551 aatccgtcga ctttataagt tgtgagggtt caagtccctc tatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
597 |
578 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.