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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ847400.1 nt Ixora narcissodora chloroplast DNA ... 1696 bp Ixora narcissodora QL-PLN-00-007 564 bp View
AJ847401.1 nt Canthium coromandelicum chloroplast... 1707 bp Canthium coromandelicum QL-PLN-00-007 552 bp View
AJ847402.1 nt Coffea eugenioides chloroplast DNA ... 1704 bp Coffea eugenioides QL-PLN-00-007 570 bp View
AJ847403.1 nt Tarenna neurophylla chloroplast DNA... 1692 bp Coptosperma neurophyllum QL-PLN-00-007 567 bp View
AJ847406.1 nt Pentas parvifolia chloroplast DNA f... 1697 bp Rhodopentas parvifolia QL-PLN-00-007 582 bp View
AJ854519.1 nt Phleum pratense chloroplast partial... 613 bp Phleum pratense QL-PLN-00-007 612 bp View
AJ874942.1 nt Fadogia agrestis chloroplast trnT-t... 1722 bp Fadogia agrestis QL-PLN-00-007 543 bp View
AJ874943.1 nt Fadogia arenicola chloroplast trnT-... 1715 bp Fadogia arenicola QL-PLN-00-007 552 bp View
AJ874944.1 nt Fadogia triphylla chloroplast trnT-... 1724 bp Fadogia triphylla QL-PLN-00-007 552 bp View
AJ874945.1 nt Lagynias monteiroi chloroplast trnT... 1735 bp Vangueria monteiroi QL-PLN-00-007 561 bp View
AJ874946.1 nt Lagynias pallidiflora chloroplast t... 1735 bp Vangueria pallidiflora QL-PLN-00-007 556 bp View
AJ874947.1 nt Multidentia crassa chloroplast trnT... 1680 bp Multidentia crassa QL-PLN-00-007 552 bp View
AJ874948.1 nt Multidentia sclerocarpa chloroplast... 1729 bp Multidentia sclerocarpa QL-PLN-00-007 557 bp View
AJ874949.1 nt Pachystigma gillettii chloroplast t... 1720 bp Vangueria gillettii QL-PLN-00-007 552 bp View
AJ874950.1 nt Pachystigma latifolium chloroplast ... 1739 bp Vangueria latifolia QL-PLN-00-007 556 bp View
AJ874951.1 nt Pachystigma loranthifolium chloropl... 1692 bp Vangueria loranthifolia QL-PLN-00-007 552 bp View
AJ874952.1 nt Pachystigma schumannianum chloropla... 1700 bp Vangueria schumanniana QL-PLN-00-007 552 bp View
AJ874953.1 nt Rytigynia adenodonta chloroplast tr... 1626 bp Rytigynia adenodonta QL-PLN-00-007 558 bp View
AJ874954.1 nt Rytigynia beniensis chloroplast trn... 1725 bp Rytigynia beniensis QL-PLN-00-007 552 bp View
AJ874955.1 nt Rytigynia celastroides chloroplast ... 1696 bp Rytigynia celastroides QL-PLN-00-007 558 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.