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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KX373103.1 nt Guilandina bonduc voucher Herendeen... 1069 bp Guilandina bonduc QL-PLN-00-007 589 bp View
KX373104.1 nt Guilandina major voucher Herendeen ... 1020 bp Guilandina major QL-PLN-00-007 598 bp View
KX373105.1 nt Caesalpinia echinata voucher Filgue... 1097 bp Paubrasilia echinata QL-PLN-00-007 603 bp View
KX373106.1 nt Mezoneuron scortechinii voucher Wie... 1059 bp Mezoneuron scortechinii QL-PLN-00-007 597 bp View
KX373116.1 nt Caesalpinia rostrata voucher ILC6-5... 591 bp Gelrebia rostrata QL-PLN-00-007 590 bp View
KX373120.1 nt Caesalpinia pluviosa var. maraniona... 593 bp Cenostigma pluviosum var. maraniona QL-PLN-00-007 591 bp View
KX373122.1 nt Poincianella placida voucher Lewis ... 593 bp Erythrostemon placidus QL-PLN-00-007 592 bp View
KX507245.1 nt Saccharum hybrid cultivar RB867515 ... 141181 bp Saccharum hybrid cultivar RB867515 QL-PLN-00-007 526 bp View
KX510115.1 nt Lampranthus spectabilis tRNA-Thr (t... 1791 bp Lampranthus spectabilis QL-PLN-00-007 610 bp View
KX522656.1 nt Poa badensis voucher PI 659654 trnT... 1832 bp Poa badensis QL-PLN-00-007 563 bp View
KX522657.1 nt Poa bucharica voucher PI 659940 trn... 1873 bp Poa bucharica QL-PLN-00-007 618 bp View
KX522665.1 nt Poa nemoralis voucher PI 371759 trn... 1855 bp Poa nemoralis QL-PLN-00-007 611 bp View
KX522666.1 nt Poa nervosa voucher PI 232352 trnT-... 1858 bp Poa nervosa QL-PLN-00-007 616 bp View
KX522667.1 nt Poa palustris voucher PI 232351 trn... 1854 bp Poa palustris QL-PLN-00-007 611 bp View
KX522668.1 nt Poa pumila voucher PI 662326 trnT-L... 1821 bp Poa pumila QL-PLN-00-007 563 bp View
KX522671.1 nt Arctopoa tibetica voucher W6 30476 ... 1859 bp Arctopoa tibetica QL-PLN-00-007 618 bp View
KX522672.1 nt Poa trivialis voucher PI 594396 trn... 1830 bp Poa trivialis QL-PLN-00-007 611 bp View
KX522673.1 nt Poa trivialis voucher GR 4757 trnT-... 1831 bp Poa trivialis QL-PLN-00-007 611 bp View
KX572958.1 nt Ficus sarmentosa var. thunbergii is... 1037 bp Ficus sarmentosa var. thunbergii QL-PLN-00-007 581 bp View
KX572959.1 nt Ficus sarmentosa var. nipponica iso... 1037 bp Ficus sarmentosa var. nipponica QL-PLN-00-007 581 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.