Match details
Record ID: |
KX572958.1 |
Database: |
nt |
Go to original record |
Description: |
Ficus sarmentosa var. thunbergii isolate WMR tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Ficus sarmentosa var. thunbergii |
Original size: |
1037 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
591 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgaattg agcgttggta
51 tggaaaccta ccaagtgata actttcaaat tcagagaaac cctggaatta
101 aaaatgggca atcctgagcc aaatccggtt ttctgaaaac aaacaagggt
151 tcagaaggcg ataataaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttggc tgcggtgcgt tagtaaagga atcactccag
251 aaaggatgaa gaataaacct atatacgtat acgtactgaa atagtatctt
301 caaatgatta atgacaaccc aaatccgtat ttcttttcat tttcatgaaa
351 aatgaaagaa ttattgtaaa tcaattatta agttgaaaaa agaattaaat
401 attcattaat caaatcattt actccatcaa aatctgatag atcttttgaa
451 gaatggatta atcggacgag aataaagata gagtcccatt ttacatgtca
501 atatcgacaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.