Match details
Record ID: |
KX522656.1 |
Database: |
nt |
Go to original record |
Description: |
Poa badensis voucher PI 659654 trnT-L intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene and trnL-F intergenic spacer, complete sequence; and tRNA-Phe (trnF-GAA) gene, partial sequence; chloroplast. |
Taxon: |
Poa badensis |
Original size: |
1832 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
870 |
1432 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttgattg taytgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaaag gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tcctttaata
251 aacacgtatc gatacttaca tagcaaacga ttaatcacag aacccatatt
301 ataatattgg ttctttattc ttttttagaa tgaaataaaa aattctgaat
351 ttttttcgaa ttattgtgaa tccattccaa tcgaatattt agtaatcaaa
401 tccttcaatt caaagttttg aggtctttaa aaaagtggat taatcggacg
451 aggacaaaga gagagtccca ttctacatgt caatactgac aacaatgaaa
501 tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg agggttcaag
551 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.