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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT281151.1 nt Alloteropsis semialata isolate LO1A... 139802 bp Alloteropsis semialata QL-PLN-00-007 609 bp View
KT281152.1 nt Alloteropsis semialata isolate LO2O... 139641 bp Alloteropsis semialata QL-PLN-00-007 609 bp View
KT281153.1 nt Alloteropsis semialata isolate LO4C... 139719 bp Alloteropsis semialata QL-PLN-00-007 609 bp View
KT289403.1 nt Oryza sativa Aromatic Japonica Grou... 134499 bp Oryza sativa aromatic subgroup QL-PLN-00-007 615 bp View
KT289404.1 nt Oryza sativa Tropical Japonica Grou... 134536 bp Oryza sativa tropical japonica subgroup QL-PLN-00-007 615 bp View
KT366156.1 nt Markea purpurea isolate LB3283 tRNA... 1764 bp Markea purpurea QL-PLN-00-007 571 bp View
KT366159.1 nt Dyssochroma viridiflora isolate LB3... 1598 bp Dyssochroma viridiflora QL-PLN-00-007 571 bp View
KT366164.1 nt Juanulloa verrucosa isolate LB273 t... 1721 bp Juanulloa verrucosa QL-PLN-00-007 572 bp View
KT366166.1 nt Merinthopodium vogelii isolate LB32... 1716 bp Merinthopodium vogelii QL-PLN-00-007 572 bp View
KT366168.1 nt Trianaea neovisae isolate LB3267 tR... 1733 bp Trianaea neovisae QL-PLN-00-007 572 bp View
KT366169.1 nt Trianaea speciosa isolate LB3269 tR... 1729 bp Trianaea speciosa QL-PLN-00-007 572 bp View
KT366170.1 nt Trianaea sp. Orozco et al. 3885 tRN... 1714 bp Trianaea sp. Orozco et al. 3885 QL-PLN-00-007 572 bp View
KT366171.1 nt Markea formicarum isolate LB3259 tR... 1736 bp Markea formicarum QL-PLN-00-007 571 bp View
KT366175.1 nt Juanulloa ochracea isolate LB3274 t... 1716 bp Juanulloa ochracea QL-PLN-00-007 572 bp View
KT366176.1 nt Juanulloa ochracea isolate LB3323 t... 1694 bp Juanulloa ochracea QL-PLN-00-007 572 bp View
KT366177.1 nt Markea panamensis isolate LB3260 tR... 1727 bp Markea panamensis QL-PLN-00-007 567 bp View
KT366178.1 nt Merinthopodium neuranthum isolate L... 1682 bp Merinthopodium neuranthum QL-PLN-00-007 561 bp View
KT366183.1 nt Markea antioquiensis isolate LB3263... 1715 bp Markea antioquiensis QL-PLN-00-007 572 bp View
KT366184.1 nt Markea panamensis isolate LB3334 tR... 1724 bp Markea panamensis QL-PLN-00-007 567 bp View
KT366186.1 nt Markea sessiliflora isolate LB3468 ... 1711 bp Markea sessiliflora QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.