Match details
Record ID: |
KT366175.1 |
Database: |
nt |
Go to original record |
Description: |
Juanulloa ochracea isolate LB3274 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Juanulloa ochracea |
Original size: |
1716 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
736 |
1307 |
+ |
572 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151 agacaaaaag gataggtgca gagactcaac ggaggctatt ctaacaaatg
201 gagttaaatg cgttggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gggaaggata aacgtatata catacgtatt gaatactcta
301 tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaaataga
351 agaattggtg tgaatcgatt ctacattgaa gaaagaatcg aatattcgtt
401 aatcaaatca ttcactccca tagtctgata gatcttttga agaactgatt
451 aatcggacga gaataaagat agagtcccgt tctacatgtc aataccggca
501 acaatgaaat ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga
551 gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
572 |
553 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.